Read in data that was generated by galaxy team and EC-19 team along with the table from Ryan that has the metadata.
| Group_Name | Accession | Pos | Ref | Alt | DP | G_AD_2 | Alt_Freq |
|---|
| Group_Name | Accession | Pos | Ref | Alt | DP | G_AD_2 | Alt_Freq | biosample | platform | bioproject | center_name | librarylayout | libraryselection | librarysource | attributes | ec-19_run_with_primer_trim | ec19_status | ec19_vars | New_Alt | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | LANL | ERR4364963 | 241 | C | T | 3510 | 3441 | 0.9806 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_241.0 | T |
| 1 | LANL | ERR4364963 | 3037 | C | T | 1752 | 1750 | 0.9994 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_3037.0 | T |
| 2 | LANL | ERR4364963 | 4186 | T | C | 6464 | 6462 | 0.9998 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_4186.0 | C |
| 3 | LANL | ERR4364963 | 11801 | G | A | 6513 | 6511 | 0.9997 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_11801.0 | A |
| 4 | LANL | ERR4364963 | 14408 | C | T | 6418 | 6414 | 0.9995 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_14408.0 | T |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 8243 | LANL | SRR13870639 | 23874 | C | C(Y) | 1968 | 515 | 0.2617 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snv | SRR13870639_23874.0 | CT |
| 8244 | LANL | SRR13870639 | 25563 | G | T | 7268 | 6600 | 0.9081 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snp | SRR13870639_25563.0 | T |
| 8245 | LANL | SRR13870639 | 27357 | A | G | 7847 | 6633 | 0.8453 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snp | SRR13870639_27357.0 | G |
| 8246 | LANL | SRR13870639 | 27964 | C | T | 4417 | 4008 | 0.9076 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snp | SRR13870639_27964.0 | T |
| 8247 | LANL | SRR13870639 | 28916 | G | G(R) | 6914 | 1449 | 0.2096 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snv | SRR13870639_28916.0 | AG |
8248 rows × 20 columns
| Group_Name | Accession | Pos | Ref | Alt | DP | G_AD_2 | Alt_Freq | biosample | platform | bioproject | center_name | librarylayout | libraryselection | librarysource | attributes | ec-19_run_with_primer_trim | ec19_status | ec19_vars | New_Alt | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | LANL | ERR4364963 | 241 | C | T | 3510 | 3441 | 0.9806 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_241.0 | T |
| 1 | LANL | ERR4364963 | 3037 | C | T | 1752 | 1750 | 0.9994 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_3037.0 | T |
| 2 | LANL | ERR4364963 | 4186 | T | C | 6464 | 6462 | 0.9998 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_4186.0 | C |
| 3 | LANL | ERR4364963 | 11801 | G | A | 6513 | 6511 | 0.9997 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_11801.0 | A |
| 4 | LANL | ERR4364963 | 14408 | C | T | 6418 | 6414 | 0.9995 | SAMEA7080096 | ILLUMINA | PRJEB37886 | ORIGINATING LAB: WALES SPECIALIST VIROLOGY CEN... | PAIRED | PCR | VIRAL RNA | ena_last_update_sam: 2020-07-22;sample_capture... | artic_primer_v3 | snp | ERR4364963_14408.0 | T |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 8243 | LANL | SRR13870639 | 23874 | C | C(Y) | 1968 | 515 | 0.2617 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snv | SRR13870639_23874.0 | CT |
| 8244 | LANL | SRR13870639 | 25563 | G | T | 7268 | 6600 | 0.9081 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snp | SRR13870639_25563.0 | T |
| 8245 | LANL | SRR13870639 | 27357 | A | G | 7847 | 6633 | 0.8453 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snp | SRR13870639_27357.0 | G |
| 8246 | LANL | SRR13870639 | 27964 | C | T | 4417 | 4008 | 0.9076 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snp | SRR13870639_27964.0 | T |
| 8247 | LANL | SRR13870639 | 28916 | G | G(R) | 6914 | 1449 | 0.2096 | SAMN18188233 | OXFORD_NANOPORE | PRJNA707211 | UNIVERSITY OF TEXAS MEDICAL BRANCH | SINGLE | RT-PCR | VIRAL RNA | collection_date_sam: 2020-04;primary_search: 1... | NaN | snv | SRR13870639_28916.0 | AG |
6616 rows × 20 columns
Add a column to galaxy dataframe for naming if its snp, in, del, or multi-snp
Expand deletion
Concatenating dataframes
Add the status to ec19 dataframe
Add a column that combines SRR and the position for each column.
Expand IUPAC code to nuleotides
| galaxy_ref | galaxy_alt | galaxy_vars | gal_status | ec19_ref | ec19_vars | ec19_alt | ec19_status | platform | Accession | Pos | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | T | - | ERR4364963_27098.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4364963 | 27098.0 |
| 1 | TA | - | ERR4365125_6776.0 | deletion | TA | ERR4365125_6776.0 | - | deletion | ILLUMINA | ERR4365125 | 6776.0 |
| 2 | TG | - | ERR4365125_7910.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4365125 | 7910.0 |
| 3 | G | - | ERR4365125_9251.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4365125 | 9251.0 |
| 4 | GTG | - | ERR4365125_9267.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4365125 | 9267.0 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 7216 | NaN | NaN | NaN | NaN | G | SRR13870639_2198.0 | AG | snv | OXFORD_NANOPORE | SRR13870639 | 2198.0 |
| 7217 | NaN | NaN | NaN | NaN | C | SRR13870639_5736.0 | CT | snv | OXFORD_NANOPORE | SRR13870639 | 5736.0 |
| 7218 | NaN | NaN | NaN | NaN | T | SRR13870639_11075.0 | - | deletion | OXFORD_NANOPORE | SRR13870639 | 11075.0 |
| 7219 | NaN | NaN | NaN | NaN | C | SRR13870639_23874.0 | CT | snv | OXFORD_NANOPORE | SRR13870639 | 23874.0 |
| 7220 | NaN | NaN | NaN | NaN | G | SRR13870639_28916.0 | AG | snv | OXFORD_NANOPORE | SRR13870639 | 28916.0 |
7221 rows × 11 columns
| galaxy_ref | galaxy_alt | galaxy_vars | gal_status | ec19_ref | ec19_vars | ec19_alt | ec19_status | platform | Accession | Pos | match | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | T | - | ERR4364963_27098.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4364963 | 27098.0 | Galaxy |
| 1 | TA | - | ERR4365125_6776.0 | deletion | TA | ERR4365125_6776.0 | - | deletion | ILLUMINA | ERR4365125 | 6776.0 | shared |
| 2 | TG | - | ERR4365125_7910.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4365125 | 7910.0 | Galaxy |
| 3 | G | - | ERR4365125_9251.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4365125 | 9251.0 | Galaxy |
| 4 | GTG | - | ERR4365125_9267.0 | deletion | NaN | NaN | NaN | NaN | NaN | ERR4365125 | 9267.0 | Galaxy |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 7216 | NaN | NaN | NaN | NaN | G | SRR13870639_2198.0 | AG | snv | OXFORD_NANOPORE | SRR13870639 | 2198.0 | EC19 |
| 7217 | NaN | NaN | NaN | NaN | C | SRR13870639_5736.0 | CT | snv | OXFORD_NANOPORE | SRR13870639 | 5736.0 | EC19 |
| 7218 | NaN | NaN | NaN | NaN | T | SRR13870639_11075.0 | - | deletion | OXFORD_NANOPORE | SRR13870639 | 11075.0 | EC19 |
| 7219 | NaN | NaN | NaN | NaN | C | SRR13870639_23874.0 | CT | snv | OXFORD_NANOPORE | SRR13870639 | 23874.0 | EC19 |
| 7220 | NaN | NaN | NaN | NaN | G | SRR13870639_28916.0 | AG | snv | OXFORD_NANOPORE | SRR13870639 | 28916.0 | EC19 |
7221 rows × 12 columns
| galaxy_ref | galaxy_alt | galaxy_vars | gal_status | ec19_ref | ec19_vars | ec19_alt | ec19_status | platform | Accession | Pos | match | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | T | - | ERR4364963_27098.0 | deletion | NaN | NaN | NaN | NaN | ILLUMINA | ERR4364963 | 27098.0 | Galaxy |
| 1 | TA | - | ERR4365125_6776.0 | deletion | TA | ERR4365125_6776.0 | - | deletion | ILLUMINA | ERR4365125 | 6776.0 | shared |
| 2 | TG | - | ERR4365125_7910.0 | deletion | NaN | NaN | NaN | NaN | ILLUMINA | ERR4365125 | 7910.0 | Galaxy |
| 3 | G | - | ERR4365125_9251.0 | deletion | NaN | NaN | NaN | NaN | ILLUMINA | ERR4365125 | 9251.0 | Galaxy |
| 4 | GTG | - | ERR4365125_9267.0 | deletion | NaN | NaN | NaN | NaN | ILLUMINA | ERR4365125 | 9267.0 | Galaxy |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 7182 | NaN | NaN | NaN | NaN | A | SRR13870673_11673.0 | AG | snv | ILLUMINA | SRR13870673 | 11673.0 | EC19 |
| 7183 | NaN | NaN | NaN | NaN | C | SRR13870673_25324.0 | AC | snv | ILLUMINA | SRR13870673 | 25324.0 | EC19 |
| 7184 | NaN | NaN | NaN | NaN | G | SRR13870681_8322.0 | CG | snv | ILLUMINA | SRR13870681 | 8322.0 | EC19 |
| 7185 | NaN | NaN | NaN | NaN | G | SRR13870682_8322.0 | CG | snv | ILLUMINA | SRR13870682 | 8322.0 | EC19 |
| 7186 | NaN | NaN | NaN | NaN | T | SRR13870682_8323.0 | CT | snv | ILLUMINA | SRR13870682 | 8323.0 | EC19 |
1994 rows × 12 columns
| galaxy_ref | galaxy_alt | galaxy_vars | gal_status | ec19_ref | ec19_vars | ec19_alt | ec19_status | platform | Accession | Pos | match |
|---|
['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared'] ['EC19', 'shared', 'Galaxy'] ['shared'] ['EC19', 'shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['EC19', 'Galaxy'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared'] ['shared', 'EC19'] ['shared'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared'] ['shared'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19-galaxy', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared', 'Galaxy'] ['shared'] ['shared'] ['shared'] ['shared'] ['shared', 'Galaxy'] ['shared'] ['shared'] ['shared', 'EC19'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared'] ['shared'] ['shared'] ['shared', 'EC19-galaxy'] ['shared'] ['shared', 'EC19'] ['shared'] ['shared'] ['shared', 'Galaxy'] ['shared'] ['shared'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared'] ['shared'] ['shared'] ['shared', 'Galaxy'] ['shared', 'EC19'] ['shared'] ['shared'] ['shared', 'EC19'] ['shared'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'Galaxy'] ['shared', 'EC19'] ['shared'] ['shared'] ['shared'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19-galaxy', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19-galaxy', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19-galaxy', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19-galaxy', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19-galaxy', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared'] ['shared', 'EC19'] ['shared'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19-galaxy', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'EC19-galaxy', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['EC19', 'shared', 'Galaxy'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19'] ['shared', 'EC19']
| galaxy_ref | galaxy_alt | galaxy_vars | gal_status | ec19_ref | ec19_vars | ec19_alt | ec19_status | platform | Accession | Pos | match | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 667 | T | A | ERR4969177_5260.0 | snp | NaN | NaN | NaN | NaN | ILLUMINA | ERR4969177 | 5260.0 | Galaxy |
| 668 | T | G | ERR4969177_7623.0 | snp | NaN | NaN | NaN | NaN | ILLUMINA | ERR4969177 | 7623.0 | Galaxy |
| 669 | A | G | ERR4969177_7626.0 | snp | NaN | NaN | NaN | NaN | ILLUMINA | ERR4969177 | 7626.0 | Galaxy |
| 670 | T | C | ERR4969177_8953.0 | snp | NaN | NaN | NaN | NaN | ILLUMINA | ERR4969177 | 8953.0 | Galaxy |
| 671 | A | G | ERR4969177_9834.0 | snp | NaN | NaN | NaN | NaN | ILLUMINA | ERR4969177 | 9834.0 | Galaxy |
| 672 | T | C | ERR4969177_10665.0 | snp | NaN | NaN | NaN | NaN | ILLUMINA | ERR4969177 | 10665.0 | Galaxy |
| 673 | A | G | ERR4969177_19864.0 | snp | NaN | NaN | NaN | NaN | ILLUMINA | ERR4969177 | 19864.0 | Galaxy |
| 5562 | NaN | NaN | NaN | NaN | G | ERR4969177_25314.0 | T | snp | ILLUMINA | ERR4969177 | 25314.0 | EC19 |
| 5563 | NaN | NaN | NaN | NaN | C | ERR4969177_25317.0 | G | snp | ILLUMINA | ERR4969177 | 25317.0 | EC19 |
There was an error when executing cell [19]. Please run Voilà with --show_tracebacks=True or --debug to see the error message, or configure VoilaConfiguration.show_tracebacks.